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Improving Efficiency in Parameter Estimation Using the Hamiltonian Monte Carlo Algorithm

Mohammed Alfaki

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Abstract

This thesis investigates three approaches to improve the performance of the Hamiltonian Monte Carlo algorithm. The first approach enhances the Hamiltonian Monte Carlo by suppressing random walk in the Gibbs sampling using ordered over--relaxation. The second approach investigates the simulation of the Hamiltonian dynamics using an adaptive step--size to reduce the error of the simulation. The third proposal is to combine the two versions into one algorithm.

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What this paper is about

This thesis investigates three approaches to improve the performance of the Hamiltonian Monte Carlo algorithm. The first approach enhances the Hamiltonian Monte Carlo by suppressing random walk in the Gibbs sampling using ordered over--relaxation. The second approach investigates the simulation of the Hamiltonian dynamics using an adaptive step--size to reduce the error of the simulation. The third proposal is to combine the two versions into one algorithm.

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Available abstract

This thesis investigates three approaches to improve the performance of the Hamiltonian Monte Carlo algorithm. The first approach enhances the Hamiltonian Monte Carlo by suppressing random walk in the Gibbs sampling using ordered over--relaxation. The second approach investigates the simulation of the Hamiltonian dynamics using an adaptive step--size to reduce the error of the simulation. The third proposal is to combine the two versions into one algorithm.

Key concepts: Hybrid Monte Carlo, Markov chain Monte Carlo, Monte Carlo method, Monte Carlo method in statistical physics, Monte Carlo molecular modeling, Metropolis–Hastings algorithm, Rejection sampling, Gibbs sampling

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