Hamiltonian Monte Carlo with explicit, reversible, and volume-preserving adaptive step size control
Michiko Okudo, Hideyuki Suzuki
Abstract
Open-access reader
Michiko Okudo, Hideyuki Suzuki
Abstract
Open-access reader
Hamiltonian Monte Carlo is a Markov chain Monte Carlo method that uses Hamiltonian dynamics to efficiently produce distant samples. It employs geometric numerical integration to simulate Hamiltonian dynamics, which is a key of its high performance. We present a Hamiltonian Monte Carlo method with adaptive step size control to further enhance the efficiency. We propose a new explicit, reversible, and volume-preserving integration method to adaptively set the step sizes, which does not violate the detailed balance condition or require a large increase in computational time.
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Hamiltonian Monte Carlo is a Markov chain Monte Carlo method that uses Hamiltonian dynamics to efficiently produce distant samples. It employs geometric numerical integration to simulate Hamiltonian dynamics, which is a key of its high performance. We present a Hamiltonian Monte Carlo method with adaptive step size control to further enhance the efficiency. We propose a new explicit, reversible, and volume-preserving integration method to adaptively set the step sizes, which does not violate the detailed balance condition or require a large increase in computational time.
Key concepts: Hybrid Monte Carlo, Monte Carlo method, Markov chain Monte Carlo, Hamiltonian (control theory), Detailed balance, Statistical physics, Monte Carlo integration, Monte Carlo molecular modeling