Chromatin immunoprecipitation assays : methods and protocols

1. The State-of-the-Art of Chromatin Immunoprecipitation Philippe Collas 2. Characterization and Quality Control of Antibodies Used in ChIP Assays Geraldine Goens, Dorina Rusu, Laurent Bultot, Jean-Jacques Goval, and Juana Magdalena 3. The Fast Chromatin Immunoprecipitation Method Joel Nelson, Oleg Denisenko, and Karol Bomsztyk 4. ChIP: Chromatin Immunoprecipitation for Small Cell Numbers John Arne Dahl and Philippe Collas 5. Fish'n ChIPs: Chromatin Immunoprecipitation in the Zebrafish Embryo Leif C. Lindeman, Linn T. Vogt-Kielland, Peter Alestroem, and Philippe Collas 6. Epitope Tagging of Endogenous Proteins for Genome-Wide Chromatin Immunoprecipitation Analysis Zhenghe Wang 7. Flow Cytometric and Laser Scanning Microscopic Approaches in Epigenetics Research Lorant Szekvolgyi, Laszlo Imre, Doan Xuan Quang Minh, Eva Hegedus, Zsolt Bacso, and Gabor Szabo 8. Serial Analysis of Binding Elements for Transcription Factors Jiguo Chen 9. Modeling and Analysis of ChIP-Chip Experiments Raphael Gottardo 10. Use of SNP Arrays for ChIP Assays: Computational Aspects Enrique M. Muro, Jennifer A. McCann Michael A. Rudnicki, and Miguel A. Andrade-Navarro 11. DamID: A Methylation-Based Chromatin Profiling Approach Mona Abed, Dorit Kenyagin-Karsenti, Olga Boico, and Amir Orian 12. Chromosome Conformation Capture (from 3C to 5C) and Its ChIP-Based Modification Alexey Gavrilov, Elvira Eivazova, Iryna Priozhkova, Marc Lipinski, Sergey Razin, and Yegor Vassetzky 13. Determining Spatial Chromatin Organization of Large Genomic Regions Using 5C Technology Nynke L. van Berkum and Job Dekker 14. Analysis of Nascent RNA Transcripts by Chromatin RNA Immunoprecipitation Ales Obrdlik andPiergiorgio Percipalle 15. Methyl DNA Immunoprecipitation Jean Jacques Goval and Juana Magdalena 16. Immunoprecipitation of Methylated DNA Anita L. Sorensen and Philippe Collas