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High-Coverage Long Read DNA Sequencing with the Oxford Nanopore MinION - eScholarship

Miten Jain

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Abstract

Nanopore sequencing was conceived in 1989 by Dave Deamer (UCSC). Over two decades of development from research laboratories and, later on, Oxford Nanopore Technologies resulted in the MinION nanopore sequencer. This work describes the developments in MinION nanopore sequencing and software, and technical milestones achieved since the MinION’s release in 2014. These developments include establishing DNA reads that exceed 200 kb+ lengths and direct, simultaneous detection of nucleotide modifications in DNA and RNA. Due to their portability and real-time aspect, MinIONs are poised to become a routine tool for genomics and biology.

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What this paper is about

Nanopore sequencing was conceived in 1989 by Dave Deamer (UCSC). Over two decades of development from research laboratories and, later on, Oxford Nanopore Technologies resulted in the MinION nanopore sequencer. This work describes the developments in MinION nanopore sequencing and software, and technical milestones achieved since the MinION’s release in 2014. These developments include establishing DNA reads that exceed 200 kb+ lengths and direct, simultaneous detection of nucleotide modifications in DNA and RNA. Due to their portability and real-time aspect, MinIONs are poised to become a routine tool for genomics and biology.

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Available abstract

Nanopore sequencing was conceived in 1989 by Dave Deamer (UCSC). Over two decades of development from research laboratories and, later on, Oxford Nanopore Technologies resulted in the MinION nanopore sequencer. This work describes the developments in MinION nanopore sequencing and software, and technical milestones achieved since the MinION’s release in 2014. These developments include establishing DNA reads that exceed 200 kb+ lengths and direct, simultaneous detection of nucleotide modifications in DNA and RNA. Due to their portability and real-time aspect, MinIONs are poised to become a routine tool for genomics and biology.

Key concepts: Minion, Nanopore sequencing, Software portability, Nanopore, DNA sequencer, DNA sequencing, Computer science, Computational biology

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