Quick Detection of Multiple Potato Viruses by Multiplex RT-PCR
Min Zhang
Abstract
Min Zhang
Abstract
The primers for potato virus X(PVX),potato virus S(PVS),potato virus A(PVA) and potato leaf roll virus(PLRV) fragments were designed based on their coat protein region,and a multiplex reverse transcription polymerase chain reaction(m-RT-PCR) was optimized from dNTPs concentration,annealing temperature,Mg2+ concentration and cyclic conditions.The optimized m-RT-PCR can amplify PVX,PVS,PVA and PLRV simultaneously,and the fragments were 620 bp(PVX),435 bp(PVS),300 bp(PVA) and 222 bp(PLRV).The results showed that the dNTPs concentration at reverse transcription stage(RT) and the Mg2 + concentration at PCR stage had a great impact on the detection performance,and next was the annealing temperature at PCR stage;the cyclic conditions has small impact on the detection results.The optimized m-RT-PCR provide a quick,sensitive and simple method for detecting potato viruses,and it also provide a effective way for early detection and control of potato viruses
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The primers for potato virus X(PVX),potato virus S(PVS),potato virus A(PVA) and potato leaf roll virus(PLRV) fragments were designed based on their coat protein region,and a multiplex reverse transcription polymerase chain reaction(m-RT-PCR) was optimized from dNTPs concentration,annealing temperature,Mg2+ concentration and cyclic conditions.The optimized m-RT-PCR can amplify PVX,PVS,PVA and PLRV simultaneously,and the fragments were 620 bp(PVX),435 bp(PVS),300 bp(PVA) and 222 bp(PLRV).The results showed that the dNTPs concentration at reverse transcription stage(RT) and the Mg2 + concentration at PCR stage had a great impact on the detection performance,and next was the annealing temperature at PCR stage;the cyclic conditions has small impact on the detection results.The optimized m-RT-PCR provide a quick,sensitive and simple method for detecting potato viruses,and it also provide a effective way for early detection and control of potato viruses
Key concepts: Potato virus X, Potato leafroll virus, Multiplex, Reverse transcription polymerase chain reaction, Potato virus Y, Virology, Reverse transcriptase, Virus