Analysis of Genetic Diversity in Leek Cultivars Based on RAPD
YU Jiao-jiao
Abstract
YU Jiao-jiao
Abstract
Random amplified polymorphic DNA(RAPD) markers were used to estimate the genetic diversity in 15 cultivars of Allium tuberosum(leek) from 11 regions in China.Twenty random primers generated a total of 136 reproducible and discernible loci,among which 98 were polymorphic with the percent of polymorphic loci of 72%.Based on the Nei's genetic distances between the 15 cultivars,UPGMA cluster analysis was performed and showed that all cultivars were classified into four groups at genetic distance of 0.34,i.e.,Goup 1 contained 3 cultivars(Du Genhong,Lanzhou baigen and Nanjing mabianjiu);Goup 2 included 3 cultivars(Hanzhong dongjiu,Shanghai qiangjiu-3 and Shanghai qiangjiu-6);Goup 3 contained 5 cultivars(Sijiqing,Guilin xiaohonggen,Tianjin daqingmiao,Xinjiang baigen and Jiaxing xuelian);Goup 4 included 4 cultivars(Tianjin dajingou,Huanjiu,Pingfeng taijiu and Kanghan taijiu).There were no correlation between cultivars and origin regions of leeks.
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Random amplified polymorphic DNA(RAPD) markers were used to estimate the genetic diversity in 15 cultivars of Allium tuberosum(leek) from 11 regions in China.Twenty random primers generated a total of 136 reproducible and discernible loci,among which 98 were polymorphic with the percent of polymorphic loci of 72%.Based on the Nei's genetic distances between the 15 cultivars,UPGMA cluster analysis was performed and showed that all cultivars were classified into four groups at genetic distance of 0.34,i.e.,Goup 1 contained 3 cultivars(Du Genhong,Lanzhou baigen and Nanjing mabianjiu);Goup 2 included 3 cultivars(Hanzhong dongjiu,Shanghai qiangjiu-3 and Shanghai qiangjiu-6);Goup 3 contained 5 cultivars(Sijiqing,Guilin xiaohonggen,Tianjin daqingmiao,Xinjiang baigen and Jiaxing xuelian);Goup 4 included 4 cultivars(Tianjin dajingou,Huanjiu,Pingfeng taijiu and Kanghan taijiu).There were no correlation between cultivars and origin regions of leeks.
Key concepts: RAPD, Cultivar, UPGMA, Genetic diversity, Biology, Horticulture, Veterinary medicine, Botany