2011Journal of Oceanography in Taiwan StraitRequires access

Construction of cDNA library from muscle tissue of Sepiella maindroni and analysis of expressed sequence tags

Zeng Jian-gang

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Abstract

A cDNA library from the muscle tissue of Sepiella maindroni was constructed using a cDNA library construction kit.The quality of the library reached 1.2×106 cfu/dm3 in capacity while the rate of recombinant efficiency was as high as 96%.PCR results showed that the average length of the inserts was greater than 1 000 bp.568 clones were selected and sequenced from the library,among which 475 that contained expressed sequence tags(ESTs) were greater than 100 bp.Approximately 200 single-gene clusters were acquired including 41 contigs and 159 single-copy ESTs after an initial assembly,while the redundancy rate was 57.89%.Through retrievals,53(26.5%) ESTs had no obvious homology with any known sequences in the BLASTx(E-value ≥1.00×10-10),and were identified as novel genes.147(73.5%) ESTs had relatively high homology with previously reported genes,including energy-related genes with the highest abundance of ESTs(23.0%),cellular signal transduction(17.5%),cytoskeleton(12.5%),and protein metabolism(9.5%),in addition to heat shock protein 70 and transferrin.These ESTs might facilitate further screening and cloning of uniquely expressed genes in the muscle tissues of Sepiella maindroni and other cephalopods.

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What this paper is about

A cDNA library from the muscle tissue of Sepiella maindroni was constructed using a cDNA library construction kit.The quality of the library reached 1.2×106 cfu/dm3 in capacity while the rate of recombinant efficiency was as high as 96%.PCR results showed that the average length of the inserts was greater than 1 000 bp.568 clones were selected and sequenced from the library,among which 475 that contained expressed sequence tags(ESTs) were greater than 100 bp.Approximately 200 single-gene clusters were acquired including 41 contigs and 159 single-copy ESTs after an initial assembly,while the redundancy rate was 57.89%.Through retrievals,53(26.5%) ESTs had no obvious homology with any known sequences in the BLASTx(E-value ≥1.00×10-10),and were identified as novel genes.147(73.5%) ESTs had relatively high homology with previously reported genes,including energy-related genes with the highest abundance of ESTs(23.0%),cellular signal transduction(17.5%),cytoskeleton(12.5%),and protein metabolism(9.5%),in addition to heat shock protein 70 and transferrin.These ESTs might facilitate further screening and cloning of uniquely expressed genes in the muscle tissues of Sepiella maindroni and other cephalopods.

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Available abstract

A cDNA library from the muscle tissue of Sepiella maindroni was constructed using a cDNA library construction kit.The quality of the library reached 1.2×106 cfu/dm3 in capacity while the rate of recombinant efficiency was as high as 96%.PCR results showed that the average length of the inserts was greater than 1 000 bp.568 clones were selected and sequenced from the library,among which 475 that contained expressed sequence tags(ESTs) were greater than 100 bp.Approximately 200 single-gene clusters were acquired including 41 contigs and 159 single-copy ESTs after an initial assembly,while the redundancy rate was 57.89%.Through retrievals,53(26.5%) ESTs had no obvious homology with any known sequences in the BLASTx(E-value ≥1.00×10-10),and were identified as novel genes.147(73.5%) ESTs had relatively high homology with previously reported genes,including energy-related genes with the highest abundance of ESTs(23.0%),cellular signal transduction(17.5%),cytoskeleton(12.5%),and protein metabolism(9.5%),in addition to heat shock protein 70 and transferrin.These ESTs might facilitate further screening and cloning of uniquely expressed genes in the muscle tissues of Sepiella maindroni and other cephalopods.

Key concepts: Expressed sequence tag, cDNA library, Biology, Contig, Complementary DNA, Gene, Genetics, Homology (biology)

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