2008•Acta Scientiarum Naturalium Universitatis SunyatseniRequires access

he Analysis of the Cloning and Sequence of the cDNA Gene Encoding Chitinase from Rice(Oschi)

Chen Aikui, Lu‐Jun Yu, Fan Jianming, Feng Dongru, Wang Jinfa

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Abstract

Using a degenerate primer designed for cloning chitinase cDNA from plantain banana(MpChi-1),we obtained a full-length cDNA clone named Oschi from rice by RT-PCR.The rice chitinase cDNA was 1 115 bp long and registered in GenBank with the accession number,EU045451.Using Clustal W online,we compared the cDNA sequence and amino acid sequence of Oschi with that from the plantain banana and the other monocotyledon,and constructed a phylogeny tree.The result shows that Oschi has some basic structures which are common among chitinase I gene.It shares a 99% homology with the gene sequence as well as amino sequence with those from plantain banana,and a 98% homology with that from Oryza sativa(japonica cultivar-group) which has been reported.These evidences supported that Oschi and Mpchi-1 were highly identical to the gene sequences and protein structures.

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What this paper is about

Using a degenerate primer designed for cloning chitinase cDNA from plantain banana(MpChi-1),we obtained a full-length cDNA clone named Oschi from rice by RT-PCR.The rice chitinase cDNA was 1 115 bp long and registered in GenBank with the accession number,EU045451.Using Clustal W online,we compared the cDNA sequence and amino acid sequence of Oschi with that from the plantain banana and the other monocotyledon,and constructed a phylogeny tree.The result shows that Oschi has some basic structures which are common among chitinase I gene.It shares a 99% homology with the gene sequence as well as amino sequence with those from plantain banana,and a 98% homology with that from Oryza sativa(japonica cultivar-group) which has been reported.These evidences supported that Oschi and Mpchi-1 were highly identical to the gene sequences and protein structures.

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Available abstract

Using a degenerate primer designed for cloning chitinase cDNA from plantain banana(MpChi-1),we obtained a full-length cDNA clone named Oschi from rice by RT-PCR.The rice chitinase cDNA was 1 115 bp long and registered in GenBank with the accession number,EU045451.Using Clustal W online,we compared the cDNA sequence and amino acid sequence of Oschi with that from the plantain banana and the other monocotyledon,and constructed a phylogeny tree.The result shows that Oschi has some basic structures which are common among chitinase I gene.It shares a 99% homology with the gene sequence as well as amino sequence with those from plantain banana,and a 98% homology with that from Oryza sativa(japonica cultivar-group) which has been reported.These evidences supported that Oschi and Mpchi-1 were highly identical to the gene sequences and protein structures.

Key concepts: GenBank, Complementary DNA, Chitinase, Biology, Homology (biology), Gene, Genetics, Oryza sativa

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he Analysis of the Cloning and Sequence of the cDNA Gene Encoding Chitinase from Rice(Oschi) — Research Paper | ScholarLens