2013•Xibei zhiwu xuebaoRequires access

Cloning and Expression of GhZIP4 Gene from Gossypium hirsutum

NI Wan-chao

Open publisher page 0 citations

Abstract

A GhZIP4 gene fragment was obtained from cDNA and genomic DNA of upland cotton Sumian 18 by RT-PCR and PCR with the primers designed according to the assembled ESTs of Gossypium hirsutum.The result showed that:(1)The length of the GhZIP4 cDNA sequence was 1 487 bp,it contained an ORF comprising of 1 269 bp nucleotides which encodes 422 amino acids.The amino acids sequence had the characteristics of the ZIP protein,containing 8 trans-membrane domains and a variable region between the third and the forth trans-membrane domains that included two histidine-rich domains of 'HRHSHPHG' and 'HSHGHGHD'.(2)Phylogenic tree analysis showed that the protein sequence of the GhZIP4 was highly similar to AtZIP4 of Arabidopsis ZIP family.(3)The full length of coding region of the GhZIP4 DNA sequence was 1 778 bp,containing three introns and four exons.All exon/intron junctions of the gene contained the gt/ag consensus splicing site.(4)Semi-quantitative analysis of the GhZIP4 expression showed that the gene highly expressed in stem,indicating that it may play an important role in dynamic homeostasis of some metal ion between root and shoot.

About this research paper

What this paper is about

A GhZIP4 gene fragment was obtained from cDNA and genomic DNA of upland cotton Sumian 18 by RT-PCR and PCR with the primers designed according to the assembled ESTs of Gossypium hirsutum.The result showed that:(1)The length of the GhZIP4 cDNA sequence was 1 487 bp,it contained an ORF comprising of 1 269 bp nucleotides which encodes 422 amino acids.The amino acids sequence had the characteristics of the ZIP protein,containing 8 trans-membrane domains and a variable region between the third and the forth trans-membrane domains that included two histidine-rich domains of 'HRHSHPHG' and 'HSHGHGHD'.(2)Phylogenic tree analysis showed that the protein sequence of the GhZIP4 was highly similar to AtZIP4 of Arabidopsis ZIP family.(3)The full length of coding region of the GhZIP4 DNA sequence was 1 778 bp,containing three introns and four exons.All exon/intron junctions of the gene contained the gt/ag consensus splicing site.(4)Semi-quantitative analysis of the GhZIP4 expression showed that the gene highly expressed in stem,indicating that it may play an important role in dynamic homeostasis of some metal ion between root and shoot.

Why it matters

A significance statement is not available in the OpenAlex record.

Key contribution

A contribution statement is not available in the OpenAlex record.

Method / approach

Method details are not available in the OpenAlex metadata.

Main findings

Findings are not separately available in the OpenAlex metadata.

Limitations

Limitations are not available in the OpenAlex metadata.

Applications

Application details are not available in the OpenAlex metadata.

Available abstract

A GhZIP4 gene fragment was obtained from cDNA and genomic DNA of upland cotton Sumian 18 by RT-PCR and PCR with the primers designed according to the assembled ESTs of Gossypium hirsutum.The result showed that:(1)The length of the GhZIP4 cDNA sequence was 1 487 bp,it contained an ORF comprising of 1 269 bp nucleotides which encodes 422 amino acids.The amino acids sequence had the characteristics of the ZIP protein,containing 8 trans-membrane domains and a variable region between the third and the forth trans-membrane domains that included two histidine-rich domains of 'HRHSHPHG' and 'HSHGHGHD'.(2)Phylogenic tree analysis showed that the protein sequence of the GhZIP4 was highly similar to AtZIP4 of Arabidopsis ZIP family.(3)The full length of coding region of the GhZIP4 DNA sequence was 1 778 bp,containing three introns and four exons.All exon/intron junctions of the gene contained the gt/ag consensus splicing site.(4)Semi-quantitative analysis of the GhZIP4 expression showed that the gene highly expressed in stem,indicating that it may play an important role in dynamic homeostasis of some metal ion between root and shoot.

Key concepts: Intron, Biology, Gene, Genetics, Complementary DNA, Exon, Molecular biology, Sequence analysis

Related papers

Back to paper searchBrowse research topicsOriginal source
Cloning and Expression of GhZIP4 Gene from Gossypium hirsutum — Research Paper | ScholarLens