Cloning,bioinformatics analysis and expression analysis of GpAPX during dehydration and rehydration in Grimmia pilifera
Zhang Yan-fu
Abstract
Zhang Yan-fu
Abstract
In this study,a full-length cDNA sequence of a ascorbate peroxidase(APX)gene named GpAPX was cloned from Grimmia pilifera(GenBank accession No.GU989311)using rapid amplification of cDNA ends(RACE).The full-length cDNA of GpAPX was 1 115 bp with a 771 bp open reading frame(ORF)which encoded 256 amino acids and containing a 116 bp 5′UTR and a 228 bp 3′UTR.Sequence analysis showed that GpAPX belonged to the peroxidase protein families.GpAPX protein sharing 70.2%-89.7% homology with APX proteins from other plants.QRT-PCR analysis suggested that the expression of GpAPX gene was induced in both dehydration and rehydration.The results demonstrated that the GpAPX protein may be involved in drought resisitance,and play an important role in Grimmia pilifera through responses to drought stress.
A significance statement is not available in the OpenAlex record.
A contribution statement is not available in the OpenAlex record.
Method details are not available in the OpenAlex metadata.
Findings are not separately available in the OpenAlex metadata.
Limitations are not available in the OpenAlex metadata.
Application details are not available in the OpenAlex metadata.
In this study,a full-length cDNA sequence of a ascorbate peroxidase(APX)gene named GpAPX was cloned from Grimmia pilifera(GenBank accession No.GU989311)using rapid amplification of cDNA ends(RACE).The full-length cDNA of GpAPX was 1 115 bp with a 771 bp open reading frame(ORF)which encoded 256 amino acids and containing a 116 bp 5′UTR and a 228 bp 3′UTR.Sequence analysis showed that GpAPX belonged to the peroxidase protein families.GpAPX protein sharing 70.2%-89.7% homology with APX proteins from other plants.QRT-PCR analysis suggested that the expression of GpAPX gene was induced in both dehydration and rehydration.The results demonstrated that the GpAPX protein may be involved in drought resisitance,and play an important role in Grimmia pilifera through responses to drought stress.
Key concepts: GenBank, Open reading frame, Complementary DNA, Cloning (programming), Accession number (library science), Sequence analysis, Gene, Untranslated region