2022The Journal of Physical Chemistry BRequires access

Calmodulin Modulates the Gating Properties of Voltage-Dependent Anion Channel from Rat Brain Mitochondria

Daniel Tuikhang Koren, Rajan Shrivastava, Shumaila Iqbal Siddiqui, Subhendu Ghosh

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Abstract

Calmodulin (CaM) is a key signaling protein that plays a decisive role in mitochondrial Ca 2+ homeostasis and signaling and modulates the mitochondrial membrane properties. We propose that voltage-dependent anion channel 1 (VDAC1), one of the most abundant outer mitochondrial membrane (OMM) proteins, could be its possible target or site of action. VDAC1 is known to play a crucial role in the mitochondrial Ca 2+ signaling mechanism. Bilayer electrophysiology experiments show that CaM significantly reduces VDAC1’s conductivity and modulates its gating as well as permeability properties. Also, spectrofluorimetric analysis indicates the possibility of binding CaM with VDAC1. Theoretical analysis of fluorescence data shows that the aforementioned protein–protein interaction is not linear, but rather it is a complex nonlinear process. In VDAC1, CaM binding site has been predicted using various bioinformatics tools. It is proposed that CaM could interact with VDAC1’s outer-loop region and regulate its gating properties. Our findings suggest that VDAC1–CaM interaction could play a crucial role in the transport of ions and metabolites through the OMM and the regulation of the mitochondrial Ca 2+ signaling mechanism through alteration of VDAC1’s gating and conductive properties.

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What this paper is about

Calmodulin (CaM) is a key signaling protein that plays a decisive role in mitochondrial Ca 2+ homeostasis and signaling and modulates the mitochondrial membrane properties. We propose that voltage-dependent anion channel 1 (VDAC1), one of the most abundant outer mitochondrial membrane (OMM) proteins, could be its possible target or site of action. VDAC1 is known to play a crucial role in the mitochondrial Ca 2+ signaling mechanism. Bilayer electrophysiology experiments show that CaM significantly reduces VDAC1’s conductivity and modulates its gating as well as permeability properties. Also, spectrofluorimetric analysis indicates the possibility of binding CaM with VDAC1. Theoretical analysis of fluorescence data shows that the aforementioned protein–protein interaction is not linear, but rather it is a complex nonlinear process. In VDAC1, CaM binding site has been predicted using various bioinformatics tools. It is proposed that CaM could interact with VDAC1’s outer-loop region and regulate its gating properties. Our findings suggest that VDAC1–CaM interaction could play a crucial role in the transport of ions and metabolites through the OMM and the regulation of the mitochondrial Ca 2+ signaling mechanism through alteration of VDAC1’s gating and conductive properties.

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Available abstract

Calmodulin (CaM) is a key signaling protein that plays a decisive role in mitochondrial Ca 2+ homeostasis and signaling and modulates the mitochondrial membrane properties. We propose that voltage-dependent anion channel 1 (VDAC1), one of the most abundant outer mitochondrial membrane (OMM) proteins, could be its possible target or site of action. VDAC1 is known to play a crucial role in the mitochondrial Ca 2+ signaling mechanism. Bilayer electrophysiology experiments show that CaM significantly reduces VDAC1’s conductivity and modulates its gating as well as permeability properties. Also, spectrofluorimetric analysis indicates the possibility of binding CaM with VDAC1. Theoretical analysis of fluorescence data shows that the aforementioned protein–protein interaction is not linear, but rather it is a complex nonlinear process. In VDAC1, CaM binding site has been predicted using various bioinformatics tools. It is proposed that CaM could interact with VDAC1’s outer-loop region and regulate its gating properties. Our findings suggest that VDAC1–CaM interaction could play a crucial role in the transport of ions and metabolites through the OMM and the regulation of the mitochondrial Ca 2+ signaling mechanism through alteration of VDAC1’s gating and conductive properties.

Key concepts: VDAC1, Voltage-dependent anion channel, Calmodulin, Gating, Cell biology, Mitochondrial membrane transport protein, Chemistry, Ion channel

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