IID Sampling from Posterior Dirichlet Process Mixtures
Sourabh Bhattacharya
Abstract
Open-access reader
Sourabh Bhattacharya
Abstract
Open-access reader
The influence of Dirichlet process mixture is ubiquitous in the Bayesian nonparametrics literature. But sampling from its posterior distribution remains a challenge, despite the advent of various Markov chain Monte Carlo methods. The primary challenge is the infinite-dimensional setup, and even if the infinite-dimensional random measure is integrated out, high-dimensionality and discreteness still remain difficult issues to deal with. In this article, exploiting the key ideas proposed in Bhattacharya (2021b), we propose a novel methodology for drawing iid realizations from posteriors of Dirichlet process mixtures. We focus in particular on the more general and flexible model of Bhattacharya (2008), so that the methods developed here are simply applicable to the traditional Dirichlet process mixture. We illustrate our ideas on the well-known enzyme, acidity and the galaxy datasets, which are usually considered benchmark datasets for mixture applications. Generating 10, 000 iid realizations from the Dirichlet process mixture posterior of Bhattacharya (2008) given these datasets took 19 minutes, 8 minutes and 5 minutes, respectively, in our parallel implementation.
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The influence of Dirichlet process mixture is ubiquitous in the Bayesian nonparametrics literature. But sampling from its posterior distribution remains a challenge, despite the advent of various Markov chain Monte Carlo methods. The primary challenge is the infinite-dimensional setup, and even if the infinite-dimensional random measure is integrated out, high-dimensionality and discreteness still remain difficult issues to deal with. In this article, exploiting the key ideas proposed in Bhattacharya (2021b), we propose a novel methodology for drawing iid realizations from posteriors of Dirichlet process mixtures. We focus in particular on the more general and flexible model of Bhattacharya (2008), so that the methods developed here are simply applicable to the traditional Dirichlet process mixture. We illustrate our ideas on the well-known enzyme, acidity and the galaxy datasets, which are usually considered benchmark datasets for mixture applications. Generating 10, 000 iid realizations from the Dirichlet process mixture posterior of Bhattacharya (2008) given these datasets took 19 minutes, 8 minutes and 5 minutes, respectively, in our parallel implementation.
Key concepts: Dirichlet process, Hierarchical Dirichlet process, Dirichlet distribution, Markov chain Monte Carlo, Concentration parameter, Latent Dirichlet allocation, Computer science, Bayesian probability