Establishment of real-time PCR method on detecting costimulatory molecule B7-H4 expression
Xiao Zheng, Changping Wu, Jun Wu, Changqing Lu, Mei Ji, Bin Xu, Lujun Chen, Jingting Jiang
Abstract
Xiao Zheng, Changping Wu, Jun Wu, Changqing Lu, Mei Ji, Bin Xu, Lujun Chen, Jingting Jiang
Abstract
Objective To establish a real-time polymerase chain reaction (PCR) method to detect costimulatory molecule B7-H4 gene expression. Methods The mRNA levels of costimulatory molecule B7-H4 and the reference gene GAPDH were detected by using real-time PCR using TaqMan technology. The primers and TaqMan probes of B7-H4 and GAPDH were designed. The B7-H4 and internal reference gene GAPDH fragments in pure form from classical PCR amplification were cloned into pMD19-T vector, and recombinant plasmids were used as the standard substances of B7-H4 and GAPDH quantitative detection.Standard curves were established using a serial dilution of quantified plasmids to measure B7-H4 and GAPDH. The reaction systems were optimized, and the sensitivity, specificity and reproducibility were evaluated. Results The amplification products were confirmed as the specific fragments of B7-H4 and GAPDH by DNA sequencing instrument. For B7-H4, the sensitivity was 527 copies/ml. The linear range was from 5.27 × 102 to 5.27 × 107 copies/ml, the standard curve equation was Y = - 3. 1395X +41. 805, the correlation coeffecient was 0. 995, the interassay coefficient of variations was 2. 39% -3.59%, and the amplification efficiency was 108.2%; For GAPDH, the sensitivity was 386 copies/ml. The linear range was from 3. 86 × 102 to 3.86 × 107 copies/ml, the standard curve equation was Y = - 3. 2436X +41. 083, the correlation coeffecient was 0. 999, the interassay coefficient of variations was 2. 26% -3. 86%, and the amplification efficiency was 103.4%. Conclusion The real-time PCR system for quantifying costimulatory molecule B7-H4 mRNA levels has been established successfully with high specificity, sensitivity and good repeatability. Key words: B7-H4; Costimulatory molecule; Real-time PCR
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Objective To establish a real-time polymerase chain reaction (PCR) method to detect costimulatory molecule B7-H4 gene expression. Methods The mRNA levels of costimulatory molecule B7-H4 and the reference gene GAPDH were detected by using real-time PCR using TaqMan technology. The primers and TaqMan probes of B7-H4 and GAPDH were designed. The B7-H4 and internal reference gene GAPDH fragments in pure form from classical PCR amplification were cloned into pMD19-T vector, and recombinant plasmids were used as the standard substances of B7-H4 and GAPDH quantitative detection.Standard curves were established using a serial dilution of quantified plasmids to measure B7-H4 and GAPDH. The reaction systems were optimized, and the sensitivity, specificity and reproducibility were evaluated. Results The amplification products were confirmed as the specific fragments of B7-H4 and GAPDH by DNA sequencing instrument. For B7-H4, the sensitivity was 527 copies/ml. The linear range was from 5.27 × 102 to 5.27 × 107 copies/ml, the standard curve equation was Y = - 3. 1395X +41. 805, the correlation coeffecient was 0. 995, the interassay coefficient of variations was 2. 39% -3.59%, and the amplification efficiency was 108.2%; For GAPDH, the sensitivity was 386 copies/ml. The linear range was from 3. 86 × 102 to 3.86 × 107 copies/ml, the standard curve equation was Y = - 3. 2436X +41. 083, the correlation coeffecient was 0. 999, the interassay coefficient of variations was 2. 26% -3. 86%, and the amplification efficiency was 103.4%. Conclusion The real-time PCR system for quantifying costimulatory molecule B7-H4 mRNA levels has been established successfully with high specificity, sensitivity and good repeatability. Key words: B7-H4; Costimulatory molecule; Real-time PCR
Key concepts: TaqMan, Molecular biology, Real-time polymerase chain reaction, Standard curve, Glyceraldehyde 3-phosphate dehydrogenase, Plasmid, Serial dilution, Biology