2019Journal of Plant Breeding and Crop ScienceOpen access

Genetic diversity analyses of rice germplasm using morphological traits

Soe Ibrahim, Tamu Alex, d. Asante Maxwell, Daniel Nyadanu, Akromah Richard

Open full text 16 citations

Abstract

The study of genetic diversity of any germplasm helps to facilitate its use and management. This experiment was carried out to determine the genetic diversity among 87 rice accessions from six countries. Seventeen quantitative traits were recorded based on the internationally accepted standard evaluation system for rice from IRRI. Analysis of variance, principal component analysis (PCA) and correlation amongst quantitative traits were carried out. Highly significant (P<0.001) differences were observed among the accessions for all the quantitative traits. The first five principal components accounted for 75.01% of the total genetic variance among the accessions. Some of the morphological traits had significant positive correlations with grain yield. At 21% similarity coefficient, the 87 accessions from six countries were grouped into seven clusters based on the morpho-agronomic traits. Accessions from these seven clusters have tiller number of 10-20, erect culm angle, no awn, 90-120 days to 50% flowering, semi erect flag leaf, well exserted panicle and grain width of 2-3.5 mm respectively. This experiment has proven that morphological markers are effective in assessing genetic diversity in rice. The genetic diversity revealed by the morpho-agronomic traits in this study would be very important in selecting appropriate genotypes for rice improvement in Africa and elsewhere. Key words: Genetic diversity, morpho-agronomic traits, principal component analysis, rice.

Open-access reader

About this research paper

What this paper is about

The study of genetic diversity of any germplasm helps to facilitate its use and management. This experiment was carried out to determine the genetic diversity among 87 rice accessions from six countries. Seventeen quantitative traits were recorded based on the internationally accepted standard evaluation system for rice from IRRI. Analysis of variance, principal component analysis (PCA) and correlation amongst quantitative traits were carried out. Highly significant (P<0.001) differences were observed among the accessions for all the quantitative traits. The first five principal components accounted for 75.01% of the total genetic variance among the accessions. Some of the morphological traits had significant positive correlations with grain yield. At 21% similarity coefficient, the 87 accessions from six countries were grouped into seven clusters based on the morpho-agronomic traits. Accessions from these seven clusters have tiller number of 10-20, erect culm angle, no awn, 90-120 days to 50% flowering, semi erect flag leaf, well exserted panicle and grain width of 2-3.5 mm respectively. This experiment has proven that morphological markers are effective in assessing genetic diversity in rice. The genetic diversity revealed by the morpho-agronomic traits in this study would be very important in selecting appropriate genotypes for rice improvement in Africa and elsewhere. Key words: Genetic diversity, morpho-agronomic traits, principal component analysis, rice.

Why it matters

OpenAlex reports 16 citations for this work. Citation counts describe recorded attention and do not establish research quality.

Key contribution

A contribution statement is not available in the OpenAlex record.

Method / approach

Method details are not available in the OpenAlex metadata.

Main findings

Findings are not separately available in the OpenAlex metadata.

Limitations

Limitations are not available in the OpenAlex metadata.

Applications

Application details are not available in the OpenAlex metadata.

Available abstract

The study of genetic diversity of any germplasm helps to facilitate its use and management. This experiment was carried out to determine the genetic diversity among 87 rice accessions from six countries. Seventeen quantitative traits were recorded based on the internationally accepted standard evaluation system for rice from IRRI. Analysis of variance, principal component analysis (PCA) and correlation amongst quantitative traits were carried out. Highly significant (P<0.001) differences were observed among the accessions for all the quantitative traits. The first five principal components accounted for 75.01% of the total genetic variance among the accessions. Some of the morphological traits had significant positive correlations with grain yield. At 21% similarity coefficient, the 87 accessions from six countries were grouped into seven clusters based on the morpho-agronomic traits. Accessions from these seven clusters have tiller number of 10-20, erect culm angle, no awn, 90-120 days to 50% flowering, semi erect flag leaf, well exserted panicle and grain width of 2-3.5 mm respectively. This experiment has proven that morphological markers are effective in assessing genetic diversity in rice. The genetic diversity revealed by the morpho-agronomic traits in this study would be very important in selecting appropriate genotypes for rice improvement in Africa and elsewhere. Key words: Genetic diversity, morpho-agronomic traits, principal component analysis, rice.

Key concepts: Germplasm, Biology, Genetic diversity, Panicle, Principal component analysis, Tiller (botany), Quantitative trait locus, Agronomy

Related papers

Back to paper searchBrowse research topicsOriginal source
Genetic diversity analyses of rice germplasm using morphological traits — Research Paper | ScholarLens