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2017•International Journal of Current Microbiology and Applied SciencesOpen access

Identifying Candidate Genes Based on Linked Markers for Brown Planthopper [Nilaparvata lugens (Stål)] Resistance in Rice (Oryza sativa L.)

S.P. Timmanagouda, Marappa Maheswaran

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Abstract

An in silico analysis was carried out on the brown planthopper resistant region of chromosome 6 (Chr6s: BPH-RR) in rice using the SSR markers. The study resulted in the identification of 748 gene loci/protein coding genes. Out of 748 loci analyzed 40% (301) genes are hypothetical /unknown expressed proteins and 60% of the loci are well annotated genes. Chr6s: BPH-RR (Resistance region) indicates that the majority of the genes were related to stress tolerances.

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An in silico analysis was carried out on the brown planthopper resistant region of chromosome 6 (Chr6s: BPH-RR) in rice using the SSR markers. The study resulted in the identification of 748 gene loci/protein coding genes. Out of 748 loci analyzed 40% (301) genes are hypothetical /unknown expressed proteins and 60% of the loci are well annotated genes. Chr6s: BPH-RR (Resistance region) indicates that the majority of the genes were related to stress tolerances.

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Available abstract

An in silico analysis was carried out on the brown planthopper resistant region of chromosome 6 (Chr6s: BPH-RR) in rice using the SSR markers. The study resulted in the identification of 748 gene loci/protein coding genes. Out of 748 loci analyzed 40% (301) genes are hypothetical /unknown expressed proteins and 60% of the loci are well annotated genes. Chr6s: BPH-RR (Resistance region) indicates that the majority of the genes were related to stress tolerances.

Key concepts: Brown planthopper, Oryza sativa, Gene, Biology, Genetics, In silico, Candidate gene, Chromosome

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Identifying Candidate Genes Based on Linked Markers for Brown Planthopper [Nilaparvata lugens (Stål)] Resistance in Rice (Oryza sativa L.) — Research Paper | ScholarLens