2017Unpublished venueRequires access

Quasi-biclique edge concentration: A visual analytics method for biclustering

Yosuke Onoue, Koji Koyamada

Open publisher page 3 citations

Abstract

Biclustering is a well-known approach for data mining, and it is applied in many fields, such as genome analyses, security services, and social network analyses. Biclustering finds bicliques contained in a bipartite graph. However, in real data, a biclique may lack several edges because of various reasons, such as errors. In this situation, traditional biclustering methods cannot find correct biclusters. A novel biclustering method that can analyze real data under uncertainty is needed. Quasi-biclique is a mathematical concept that represents incomplete bicliques. We propose the quasi-biclique edge concentration (QBEC) method, which is a visual analysis method for biclustering using quasi-biclique mining. QBEC includes visual representations and user interactions for quasi-bicliques. Quasi-bicliques contained in a bipartite graph are represented based on edge concentration. The incompleteness of a quasi-biclique is reflected in edge opacity. Users can interactively explore data by adjusting the incompleteness parameter of the quasi-biclique. We demonstrate the effectiveness of QBEC using real-world data.

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What this paper is about

Biclustering is a well-known approach for data mining, and it is applied in many fields, such as genome analyses, security services, and social network analyses. Biclustering finds bicliques contained in a bipartite graph. However, in real data, a biclique may lack several edges because of various reasons, such as errors. In this situation, traditional biclustering methods cannot find correct biclusters. A novel biclustering method that can analyze real data under uncertainty is needed. Quasi-biclique is a mathematical concept that represents incomplete bicliques. We propose the quasi-biclique edge concentration (QBEC) method, which is a visual analysis method for biclustering using quasi-biclique mining. QBEC includes visual representations and user interactions for quasi-bicliques. Quasi-bicliques contained in a bipartite graph are represented based on edge concentration. The incompleteness of a quasi-biclique is reflected in edge opacity. Users can interactively explore data by adjusting the incompleteness parameter of the quasi-biclique. We demonstrate the effectiveness of QBEC using real-world data.

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Available abstract

Biclustering is a well-known approach for data mining, and it is applied in many fields, such as genome analyses, security services, and social network analyses. Biclustering finds bicliques contained in a bipartite graph. However, in real data, a biclique may lack several edges because of various reasons, such as errors. In this situation, traditional biclustering methods cannot find correct biclusters. A novel biclustering method that can analyze real data under uncertainty is needed. Quasi-biclique is a mathematical concept that represents incomplete bicliques. We propose the quasi-biclique edge concentration (QBEC) method, which is a visual analysis method for biclustering using quasi-biclique mining. QBEC includes visual representations and user interactions for quasi-bicliques. Quasi-bicliques contained in a bipartite graph are represented based on edge concentration. The incompleteness of a quasi-biclique is reflected in edge opacity. Users can interactively explore data by adjusting the incompleteness parameter of the quasi-biclique. We demonstrate the effectiveness of QBEC using real-world data.

Key concepts: Biclustering, Bipartite graph, Complete bipartite graph, Computer science, Enhanced Data Rates for GSM Evolution, Graph, Cluster analysis, Data mining

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