Construction and Primary Analysis of cDNA Library From Young Mulberry Leaves
Fang Rong
Abstract
Fang Rong
Abstract
In order to isolate and clone the functional genes involved in the growth development of mulberry,the full-length cDNA library from young mulberry leaves was constructed using the method of SMART(switching mechanism at 5′ end of RNA transcript) in this paper.The library consisted of 1.02×106 pfu/mL with the recombinant percentage of 95%,which can meet the quality requirement for cDNA library construction.Forty-eight clones were randomly selected from the cDNA library and the ESTs(expressed sequence tags) were sequenced.The 32 effective sequences obtained were merged and the UniGene ratio reached to 100%.By blasting 32 effective sequences against the NCBI non-redundant nucleotide databases,we found 29 homologous sequences which contained 16 full-length sequences,and the integrity ratio of the full-length sequences was 55.2%.Six ESTs with known function,5 ESTs with putative function and 21 ESTs with unnamed or unknown function were identified.The present results have established a solid molecular base for identifying and cloning functional genes from mulberry in the future.
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In order to isolate and clone the functional genes involved in the growth development of mulberry,the full-length cDNA library from young mulberry leaves was constructed using the method of SMART(switching mechanism at 5′ end of RNA transcript) in this paper.The library consisted of 1.02×106 pfu/mL with the recombinant percentage of 95%,which can meet the quality requirement for cDNA library construction.Forty-eight clones were randomly selected from the cDNA library and the ESTs(expressed sequence tags) were sequenced.The 32 effective sequences obtained were merged and the UniGene ratio reached to 100%.By blasting 32 effective sequences against the NCBI non-redundant nucleotide databases,we found 29 homologous sequences which contained 16 full-length sequences,and the integrity ratio of the full-length sequences was 55.2%.Six ESTs with known function,5 ESTs with putative function and 21 ESTs with unnamed or unknown function were identified.The present results have established a solid molecular base for identifying and cloning functional genes from mulberry in the future.
Key concepts: UniGene, cDNA library, Expressed sequence tag, Biology, Complementary DNA, Genetics, Gene, Cloning (programming)