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K-Viz: KEGG Based Bisualization for Comparing Metabolic Pathways

Dong-Hyuk Im, Dong-Hee Lee, Hyoung-Joo Kim

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Abstract

The comparison of metabolic pathway in different species is important in detecting a missing gene. There are many visualizations for metabolic pathway. However, Biologists need not only a simple path but also a visualization for comparison. K-Viz is a tool for visualization of metabolic pathway based on KEGG. To compare pathways in different species, K-Viz uses different color for path such as PathComp in KEGG and shows the table of path in pathway. K-Viz helps biologists to understand the comparison of metabolic pathways in different species.

About this research paper

What this paper is about

The comparison of metabolic pathway in different species is important in detecting a missing gene. There are many visualizations for metabolic pathway. However, Biologists need not only a simple path but also a visualization for comparison. K-Viz is a tool for visualization of metabolic pathway based on KEGG. To compare pathways in different species, K-Viz uses different color for path such as PathComp in KEGG and shows the table of path in pathway. K-Viz helps biologists to understand the comparison of metabolic pathways in different species.

Why it matters

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Key contribution

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Method / approach

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Main findings

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Limitations

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Available abstract

The comparison of metabolic pathway in different species is important in detecting a missing gene. There are many visualizations for metabolic pathway. However, Biologists need not only a simple path but also a visualization for comparison. K-Viz is a tool for visualization of metabolic pathway based on KEGG. To compare pathways in different species, K-Viz uses different color for path such as PathComp in KEGG and shows the table of path in pathway. K-Viz helps biologists to understand the comparison of metabolic pathways in different species.

Key concepts: KEGG, Metabolic pathway, Visualization, Biological pathway, Path (computing), Computational biology, Pathway analysis, Table (database)

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