2013Kunchong zhishiRequires access

Analysis of genetic differentiation in different populations of Adoxophyes orana based on AFLP

Wei Xiao

Open publisher page 0 citations

Abstract

The AFLP technique was used to analyze genetic differentiation among 4 populations of Adoxophyes orana( Fischer von Rosslerstamm). Three pairs of primers,and 224 DNA fragments were generated,195 of which were polymorphic. Genetic diversity analysis of the populations showed a high level of genetic variation among them with Shannon's genetic diversity index ranging from 0. 2137 to 0. 2383 and Nei genetic diversity index ranged from 0. 1425 to 0. 1578. Remarkable genetic differentiation indicated by genetic differentiation coefficient( Gst) and gene flow( Nm) was detected between northern and southern populations. There was relatively strong gene flow and low genetic differentiation among the three northern populations. AMOVA analysis indicated that a high percentage of the total genetic variance( 66. 81%) was explained by the variation among populations. UPGMA cluster analysis indicated that genetic distances were closer among the Shandong,Beijing and Shanxi populations,and thus these three populations should be grouped into one clade whereas the Fujian population should be placed in another clade. The results suggest that genetic distance might be correlated with host similarity rather than the geographic distance between populations.

About this research paper

What this paper is about

The AFLP technique was used to analyze genetic differentiation among 4 populations of Adoxophyes orana( Fischer von Rosslerstamm). Three pairs of primers,and 224 DNA fragments were generated,195 of which were polymorphic. Genetic diversity analysis of the populations showed a high level of genetic variation among them with Shannon's genetic diversity index ranging from 0. 2137 to 0. 2383 and Nei genetic diversity index ranged from 0. 1425 to 0. 1578. Remarkable genetic differentiation indicated by genetic differentiation coefficient( Gst) and gene flow( Nm) was detected between northern and southern populations. There was relatively strong gene flow and low genetic differentiation among the three northern populations. AMOVA analysis indicated that a high percentage of the total genetic variance( 66. 81%) was explained by the variation among populations. UPGMA cluster analysis indicated that genetic distances were closer among the Shandong,Beijing and Shanxi populations,and thus these three populations should be grouped into one clade whereas the Fujian population should be placed in another clade. The results suggest that genetic distance might be correlated with host similarity rather than the geographic distance between populations.

Why it matters

A significance statement is not available in the OpenAlex record.

Key contribution

A contribution statement is not available in the OpenAlex record.

Method / approach

Method details are not available in the OpenAlex metadata.

Main findings

Findings are not separately available in the OpenAlex metadata.

Limitations

Limitations are not available in the OpenAlex metadata.

Applications

Application details are not available in the OpenAlex metadata.

Available abstract

The AFLP technique was used to analyze genetic differentiation among 4 populations of Adoxophyes orana( Fischer von Rosslerstamm). Three pairs of primers,and 224 DNA fragments were generated,195 of which were polymorphic. Genetic diversity analysis of the populations showed a high level of genetic variation among them with Shannon's genetic diversity index ranging from 0. 2137 to 0. 2383 and Nei genetic diversity index ranged from 0. 1425 to 0. 1578. Remarkable genetic differentiation indicated by genetic differentiation coefficient( Gst) and gene flow( Nm) was detected between northern and southern populations. There was relatively strong gene flow and low genetic differentiation among the three northern populations. AMOVA analysis indicated that a high percentage of the total genetic variance( 66. 81%) was explained by the variation among populations. UPGMA cluster analysis indicated that genetic distances were closer among the Shandong,Beijing and Shanxi populations,and thus these three populations should be grouped into one clade whereas the Fujian population should be placed in another clade. The results suggest that genetic distance might be correlated with host similarity rather than the geographic distance between populations.

Key concepts: Biology, UPGMA, Genetic diversity, Genetic variation, Genetic distance, Gene flow, Analysis of molecular variance, Population

Related papers

Back to paper searchBrowse research topicsOriginal source
Analysis of genetic differentiation in different populations of Adoxophyes orana based on AFLP — Research Paper | ScholarLens