Sequence analysis and study on the expression level of Dmc1 mRNA in yak and cattle-yak testis.
Xian Li, Li Qifa, Xingbo Zhao, Xu HongTao, Gu Yao, Zhu Xiang, Zhuang Xie, Honglin Liu
Abstract
Xian Li, Li Qifa, Xingbo Zhao, Xu HongTao, Gu Yao, Zhu Xiang, Zhuang Xie, Honglin Liu
Abstract
【Objective】 The study was aimed to investigate the coding region sequences, their structures and the expression levels of Dmc1 mRNA in yak and cattle-yak testis, so as to offer references for the revealing of the molecular mechanism of infertility of cattle-yak.【Method】RT-PCR was applied to clone the cDNA of Dmc1 gene. The coding region sequences, protein structures and phylogenetic relationships were analyzed by bioinformatics software. Real-time PCR was employed to examine the expression levels of Dmc1 mRNA in yak and cattle-yak testis. 【Result】 The coding region sequences of Dmc1 gene in yak and cattle-yak, had 1 023 bp in length, encoded 340 amino acid residues and showed 100% sequence identity with cattle and above 90% with other mammals. Both yak and cattle-yak’s Dmc1 protein contained the domain II region, which was highly conserved in the E.coli RecA-like protein family, and had the same domain regions as other mammalian Dmc1 proteins. Phylogenetic analysis showed that the cattle, yak and cattle-yak were in the same clustering, and then clustered with canine lupus familiaris, and that human, pan paniscus and macaca mulatta were in another clustering, both of which had a distant relationship with Gallus gallus. Real-time PCR analysis indicated that the difference of expression level of Dmc1 mRNA between yak and cattle-yak was extremely remarkable (P0.01), and both the Dmc1 mutant and Dmc1-knockout between cattle-yak and mice showed close similarity in phenotypes. 【Conclusion】 It was dedued that Dmc1 protein in cattle might play a key role in meiotic recombination, as which in human and mice. Dmc1 mRNA represented a dramatic difference in expression level between yak and cattle-yak, and the low expression in cattle-yak testis may be related to maleinfertility of cattle-yak, thus reflecting that Dmc1 might be a candidate gene in male infertility of cattle-yak.
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【Objective】 The study was aimed to investigate the coding region sequences, their structures and the expression levels of Dmc1 mRNA in yak and cattle-yak testis, so as to offer references for the revealing of the molecular mechanism of infertility of cattle-yak.【Method】RT-PCR was applied to clone the cDNA of Dmc1 gene. The coding region sequences, protein structures and phylogenetic relationships were analyzed by bioinformatics software. Real-time PCR was employed to examine the expression levels of Dmc1 mRNA in yak and cattle-yak testis. 【Result】 The coding region sequences of Dmc1 gene in yak and cattle-yak, had 1 023 bp in length, encoded 340 amino acid residues and showed 100% sequence identity with cattle and above 90% with other mammals. Both yak and cattle-yak’s Dmc1 protein contained the domain II region, which was highly conserved in the E.coli RecA-like protein family, and had the same domain regions as other mammalian Dmc1 proteins. Phylogenetic analysis showed that the cattle, yak and cattle-yak were in the same clustering, and then clustered with canine lupus familiaris, and that human, pan paniscus and macaca mulatta were in another clustering, both of which had a distant relationship with Gallus gallus. Real-time PCR analysis indicated that the difference of expression level of Dmc1 mRNA between yak and cattle-yak was extremely remarkable (P0.01), and both the Dmc1 mutant and Dmc1-knockout between cattle-yak and mice showed close similarity in phenotypes. 【Conclusion】 It was dedued that Dmc1 protein in cattle might play a key role in meiotic recombination, as which in human and mice. Dmc1 mRNA represented a dramatic difference in expression level between yak and cattle-yak, and the low expression in cattle-yak testis may be related to maleinfertility of cattle-yak, thus reflecting that Dmc1 might be a candidate gene in male infertility of cattle-yak.
Key concepts: Biology, Coding region, Genetics, YAK, Phylogenetic tree, Gene, Molecular biology, Animal science