2011Unpublished venueRequires access

Evaluation of seed storage protein patterns of ten wheat varieties using SDS-PAGE

Mehdi Kakaei, Danial Kahrizi

Open publisher page 11 citations

Abstract

SDS-PAGE was used to evaluate and characterize the patterns of seed storage proteins in ten bread wheat (Triticum aestivum L.) genotypes. Electrophorogram for each variety were scored for presence/absence in each sample, which were transformed into a binary data matrix. Jaccard΄s similarity coefficient, generated to determine the genetic similarity among genotypes, revealed that most of the genotypes were genetically distant from each other. The cluster analysis with UPGMA method separated the genotypes into 2 clusters. Based on Jaccard's similarity matrix, we represented a protein marker and it is clear that genotype 14GB & Hama-4, 14GB & un11 and Hama-4 & un11 have the highest similarity and lowest genetic distance. Genotypes Boomaz and Saji have the least similarity and maximum distance.

About this research paper

What this paper is about

SDS-PAGE was used to evaluate and characterize the patterns of seed storage proteins in ten bread wheat (Triticum aestivum L.) genotypes. Electrophorogram for each variety were scored for presence/absence in each sample, which were transformed into a binary data matrix. Jaccard΄s similarity coefficient, generated to determine the genetic similarity among genotypes, revealed that most of the genotypes were genetically distant from each other. The cluster analysis with UPGMA method separated the genotypes into 2 clusters. Based on Jaccard's similarity matrix, we represented a protein marker and it is clear that genotype 14GB & Hama-4, 14GB & un11 and Hama-4 & un11 have the highest similarity and lowest genetic distance. Genotypes Boomaz and Saji have the least similarity and maximum distance.

Why it matters

OpenAlex reports 11 citations for this work. Citation counts describe recorded attention and do not establish research quality.

Key contribution

A contribution statement is not available in the OpenAlex record.

Method / approach

Method details are not available in the OpenAlex metadata.

Main findings

Findings are not separately available in the OpenAlex metadata.

Limitations

Limitations are not available in the OpenAlex metadata.

Applications

Application details are not available in the OpenAlex metadata.

Available abstract

SDS-PAGE was used to evaluate and characterize the patterns of seed storage proteins in ten bread wheat (Triticum aestivum L.) genotypes. Electrophorogram for each variety were scored for presence/absence in each sample, which were transformed into a binary data matrix. Jaccard΄s similarity coefficient, generated to determine the genetic similarity among genotypes, revealed that most of the genotypes were genetically distant from each other. The cluster analysis with UPGMA method separated the genotypes into 2 clusters. Based on Jaccard's similarity matrix, we represented a protein marker and it is clear that genotype 14GB & Hama-4, 14GB & un11 and Hama-4 & un11 have the highest similarity and lowest genetic distance. Genotypes Boomaz and Saji have the least similarity and maximum distance.

Key concepts: Jaccard index, UPGMA, Similarity (geometry), Genetic similarity, Genotype, Biology, Mathematics, Horticulture

Related papers

Back to paper searchBrowse research topicsOriginal source