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Structural bioinformatics DOCKGROUND Protein-Protein Docking Decoy Set

Shiyong Liu, Ying Gao, Ilya A. Vakser

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Abstract

Summary: A protein-protein docking decoy set is built for the DOCKGROUND unbound benchmark set. The GRAMM-X docking scan was used to generate 100 non-native and at least one near-native match per complex for 61 complexes. The set is a publicly available resource for the development of scoring functions and knowledge-based potentials for protein docking methodologies. Availability: The decoys are freely available for download at

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What this paper is about

Summary: A protein-protein docking decoy set is built for the DOCKGROUND unbound benchmark set. The GRAMM-X docking scan was used to generate 100 non-native and at least one near-native match per complex for 61 complexes. The set is a publicly available resource for the development of scoring functions and knowledge-based potentials for protein docking methodologies. Availability: The decoys are freely available for download at

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Available abstract

Summary: A protein-protein docking decoy set is built for the DOCKGROUND unbound benchmark set. The GRAMM-X docking scan was used to generate 100 non-native and at least one near-native match per complex for 61 complexes. The set is a publicly available resource for the development of scoring functions and knowledge-based potentials for protein docking methodologies. Availability: The decoys are freely available for download at

Key concepts: Decoy, Docking (animal), Macromolecular docking, Computer science, Protein–ligand docking, Structural bioinformatics, Computational biology, Protein structure prediction

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