Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Ewan Birney, Paul Flicek, Damian Keefe, Ari Löytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, Abel Ureta‐Vidal, Benedict Paten, Nick Goldman, Ewan Birney, John A. Stamatoyannopoulos, Robert E. Thurman, Michael S. Kuehn, Shane J. Neph, Nathan Day, Michael O. Dorschner, Jeff Goldy, Andrew K. Haydock, Richard Humbert, Kirsten Lee, Fidencio Jun Neri, Peter J. Sabo, Richard S. Sandstrom, Anthony Shafer, Molly Weaver, William Stafford Noble, Anindya Dutta, Christopher M. Taylor, Ankit Malhotra, Patrick J. Boyle, Neerja Karnani, Gregory C. Lefebvre, Man Yu, Roderic Guigó, Tyler Alioto, France Denoeud, Robert Castelo, Julien Lagarde, Josep F. Abril, Núria López-Bigas, Eduardo Eyras, T Gingeras, Philipp Kapranov, Srinka Ghosh, Sujit Dike, Jill Cheng, Jörg Drenkow, Ian Bell, Sylvain Foissac, Evelyn J. Cheung, Madhavan Ganesh, Sandeep A. Patel, Hari Tammana, David A. Nix, Elliott H. Margulies, Francis S. Collins, E GREEN, James C. Mullikin, Gerard G. Bouffard, Jacquelyn R. Idol, Valerie V. Braden Maduro, Robert W. Blakesley, Zhiping Weng, Yutao Fu, Ulaş Karaöz, Anason S. Halees, Xiaoling Zhang, Mousheng Xu, Jane M. Lin, Hennady P. Shulha, Jaafar N. Sleiman Haidar, Yong Lin Yu, Michael Snyder, Ugrappa Nagalakshmi, Jiaqian Wu, Ghia M. Euskirchen, Stephen E. Hartman, Alexander Eckehart Urban, Peter Kraus, Joel S. Rozowsky, Deyou Zheng, Jan O. Korbel, Olof Emanuelsson, Mark Gerstein, Michael R. Seringhaus, Zhengdong D. Zhang, Emmanouil T. Dermitzakis, Christoph M. Koch, Robert Andrews, N. P. Carter, Gayle K. Clelland, Pawandeep Dhami, Shane C. Dillon, Heike Fiegler, Keith James, David L.P. Vetrie, Sarah Wilcox, Ian Dunham, Adam Frankish, Jennifer Harrow, Nancy Holroyd, Ruth Taylor, David Swarbreck, Nicholas Matthews, James G. R. Gilbert, Tim Hubbard, Jane Rogers, Joanna C. Fowler, Phillippe Couttet, Alexander W. Bruce, Oliver M. Dovey, Peter Ellis, Cordelia F. Langford, Christine Bird, Barbara E. Stranger, Antigone S. Dimas, J Huppert, Hua Cao, Brett Johnson, Ericka M. Johnson, Tristan Frum, Elizabeth Rosenzweig, Patrick A. Navas, Saurabh Asthana, Ivan A. Adzhubei, Shamil R. Sunyaev, Jason Greenbaum, Stephen C.J. Parker, Thomas D. Tullius, Sean R. Davis, Paul G. Giresi, Jason D. Lieb, Michael Hawrylycz, Job Dekker, Gregory E. Crawford, Alexandre Reymond, Jacqueline Chrast, Charlotte N. Henrichsen, Catherine Ucla, Caroline Manzano, Carine Wyss, Stylianos E. Antonarakis, Sergey I. Nikolaev, Albin Sandelin, Chikatoshi Kai, Jun Kawai, Yoshihide Hayashizaki, Ivo L. Hofacker, Christoph Flamm A, Andrea Tanzer, Stefan Washietl, Peter Florian Stadler, Robert Baertsch, Daryl J. Thomas, Matthew T. Weirauch, Todd M. Lowe, Adam C. Siepel, W. James Kent, David H. Haussler, Jakob Skou Pedersen, Kate R. Rosenbloom, Rachel Harte, Angie S. Hinrichs, Heather Trumbower, Hiram Clawson, Jennifer Hillman‐Jackson, Ann S. Zweig, Kayla E. Smith, A. Thakkapallayil, Galt P Barber, Robert M. Kuhn, Donna Karolchik, Andrew D. Kern, Heather A. Hirsch, Edward A. Sekinger, Kevin Struhl, Annie Yang, Zarmik Moqtaderi, Zhou Zhu, Atif Shahab, Claudia Fried, Jana Hertel, Manja Lindemeyer, Kristin Missal, Jörg Hackermüller, Mark C. Dickson, Richard M. Myers, Gregory M. Cooper, Eric A. Stone, Arend Sidow, Nathan D. Trinklein, Shelley Force Aldred, Sara J. Cooper, Xiaodong Zhao, Kandhadayar Gopalan Srinivasan, Wing-Kin Sung, Hong Ooi, Kuo Ping Chiu, Siew Woh Choo, Chiou Yu Choo, Chia‐Lin Wei, Yijun Ruan, Jun Liu, Fei Yao, Vinsensius Berlian Vega, Charlie W. H. Lee, Patrick Ng, Michael Richard Brent, Lior S. Pachter, Michael L. Tress, Alfonso Valencia, Taane Gregory Clark, James B. Brown, Piero Carninci, Zheng Lian, Jin Lian, S M Weissman, Peter E. Newburger, Xueqing Zhang, Peter J. Bickel, Haiyan Huang, Nancy R. Zhang, John S. Mattick, Xiaobin Guan, Nancy F. Hansen, Baishali Maskeri, Jennifer C. McDowell, Morgan Park, Pamela J. Thomas, Alice C. Young, James Taylor, Minmei Hou, Webb Miller, Ross Cameron Hardison, David C. King, Joel Martin, Laura A. Liefer, Kris A. Wetterstrand, Peter J. Good, Elise A. Feingold, Mark S. Guyer, George Asimenos, Serafim Batzoglou, Eugene V. Davydov, Colin N. Dewey, Juan I. Montoya‐Burgos, Ian Holmes, Deanna Church, Muzny Dm, Erica Sodergren, David A. Wheeler, Kim C. Worley, Huaiyang Jiang, George M. Weinstock, Richard A. Gibbs, Tina Graves, R J Fulton, Elaine R. Mardis, Richard K. Wilson, M Clamp, James Cuff, Sante Gnerre, David B. Jaffe, Jean L. Chang, Kerstin Lindblad-Toh, Eric S. Lander, Maxim Koriabine, M D Nefedov, Kazutoyo Osoegawa, Yuko Yoshinaga, Baoli Zhu, Pieter J.de Jong, L Barrera, Rhona K. Stuart, Sara Van Calcar, Nate Heintzman, Tae Hoon Kim, Kun Wang, Chunxu Qu, Gary Hon, Bing Ren, Adam Ameur, Stefan Enroth, Jan Komorowski, Mark C. Bieda, Xiaoqin Xu, Sharon L. Squazzo, Peggy Farnham, Jonghwan Kim, Akshay Bhinge, Vishwanath R. Iyer, Nan Jiang, Michael A. Singer, Todd Richmond, Kyle J. Munn, Roland D. Green, Matthew J. Oberley, David Inman, Álvaro Rada-Iglesias, Ola Wallerman, Claes Wadelius, Rosa Luna, Glass Cc, M G Rosenfeld, Lluı́s Armengol, Xavier Estivill, Paul I. W. de Bakker, Michael C. Zody, Abigail Woodroffe, Gonçalo R. Abecasis, Ingileif B. Hallgrímsdóttir