2009AFRICAN JOURNAL OF BIOTECHNOLOGYOpen access

Genetic diversity assessment of wild and cultivated varieties of Jatropha curcas (L.) in India by RAPD analysis

K. Subramanyam, D. Muralidhararao, N. Devanna

Open full text 41 citations

Abstract

The present study deals with evaluation of genetic diversity and pedigree analysis through RAPD analysis. A total number of 40 Jatropha curcas accessions collected from different geographical regions and 43 random decamer primers were screened to assess polymorphism. 10 primers were amplified and 94 polymorphic bands were found out of 125 scored. Accounting for 75.2 % polymorphism across the genotypes 12.5 bands per primer, out of 9.4 were polymorphic. Jaccard’s coefficient of similarity varied from 0.00 to 1.00 indicative of high levels of genetic variation among the genotypes studied. Cluster analysis of data using UPGMA algorithm placed the 40 accessions into 2 main clusters, with cluster II divided into six sub-clusters. The result provides valid guidelines for the collection, conservation and characterization of Jatropha curcas genetic resources.

About this research paper

What this paper is about

The present study deals with evaluation of genetic diversity and pedigree analysis through RAPD analysis. A total number of 40 Jatropha curcas accessions collected from different geographical regions and 43 random decamer primers were screened to assess polymorphism. 10 primers were amplified and 94 polymorphic bands were found out of 125 scored. Accounting for 75.2 % polymorphism across the genotypes 12.5 bands per primer, out of 9.4 were polymorphic. Jaccard’s coefficient of similarity varied from 0.00 to 1.00 indicative of high levels of genetic variation among the genotypes studied. Cluster analysis of data using UPGMA algorithm placed the 40 accessions into 2 main clusters, with cluster II divided into six sub-clusters. The result provides valid guidelines for the collection, conservation and characterization of Jatropha curcas genetic resources.

Why it matters

OpenAlex reports 41 citations for this work. Citation counts describe recorded attention and do not establish research quality.

Key contribution

A contribution statement is not available in the OpenAlex record.

Method / approach

Method details are not available in the OpenAlex metadata.

Main findings

Findings are not separately available in the OpenAlex metadata.

Limitations

Limitations are not available in the OpenAlex metadata.

Applications

Application details are not available in the OpenAlex metadata.

Available abstract

The present study deals with evaluation of genetic diversity and pedigree analysis through RAPD analysis. A total number of 40 Jatropha curcas accessions collected from different geographical regions and 43 random decamer primers were screened to assess polymorphism. 10 primers were amplified and 94 polymorphic bands were found out of 125 scored. Accounting for 75.2 % polymorphism across the genotypes 12.5 bands per primer, out of 9.4 were polymorphic. Jaccard’s coefficient of similarity varied from 0.00 to 1.00 indicative of high levels of genetic variation among the genotypes studied. Cluster analysis of data using UPGMA algorithm placed the 40 accessions into 2 main clusters, with cluster II divided into six sub-clusters. The result provides valid guidelines for the collection, conservation and characterization of Jatropha curcas genetic resources.

Key concepts: Jatropha curcas, UPGMA, Jaccard index, RAPD, Genetic diversity, Biology, Genetic similarity, Jatropha

Related papers

Back to paper searchBrowse research topicsOriginal source
Genetic diversity assessment of wild and cultivated varieties of Jatropha curcas (L.) in India by RAPD analysis — Research Paper | ScholarLens