Oligonucleotide microarray for the subtyping of influenza virus a neuraminidase
Vladimir A. Ryabinin, Elena V. Kostina, Alexander A. Neverov, Galia A. Maksakova, Alexander N. Sinyakov
Abstract
Vladimir A. Ryabinin, Elena V. Kostina, Alexander A. Neverov, Galia A. Maksakova, Alexander N. Sinyakov
Abstract
Microarray for influenza A neuraminidase subtyping was presented. Selection of oligoprobes proceeded in two steps. First step included selection of peptides specific for each subtype of neuraminidase. At the second step oligoprobes were calculated using found peptides structures with the subsequent additional selection of the most specific and representative probes. From 19 to 24 probes were used for determination of each subtype of neuraminidase. Microchip testing for 19 samples with the most widespread types (N1 and N2) specifies in unequivocal definition 18 of them and only one isolate has not been identified.
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Microarray for influenza A neuraminidase subtyping was presented. Selection of oligoprobes proceeded in two steps. First step included selection of peptides specific for each subtype of neuraminidase. At the second step oligoprobes were calculated using found peptides structures with the subsequent additional selection of the most specific and representative probes. From 19 to 24 probes were used for determination of each subtype of neuraminidase. Microchip testing for 19 samples with the most widespread types (N1 and N2) specifies in unequivocal definition 18 of them and only one isolate has not been identified.
Key concepts: Subtyping, Neuraminidase, Oligonucleotide, Neuraminidase inhibitor, Selection (genetic algorithm), Computational biology, Virology, Biology