Microbial ecology and environmental biotechnology

Aelterman P, Rabaey K, Clauwaert P, Verstarete W . (2006). Microbial fuel cells for wastewater treatment. Water Sci Technol 54 : 9–15. Article CAS Google Scholar Boeckx P, Van Cleemput O, Villaralvo I . (1997). Methane oxidation in soils with different textures and land use. Nutr Cycl Agroecosys 49 : 91–95. Article CAS Google Scholar Boon N, De Gelder L, Lievens H, Verstraete W . (2002). Bioaugmenting bioreactors for the continuous removal of 3-chloroaniline by slow release approach. Environ Sci Technol 36 : 4698–4704. Article CAS Google Scholar Curtis TP, Sloan WT . (2004). Prokaryotic diversity and its limits: microbial community structure in nature and implications for microbial ecology. Curr Opin Microbiol 7 : 221–226. Article Google Scholar Davidson SK, Koropatnick TA, Kossmehl R, Sycuro L, McFall-Ngai MJ . (2006). NO means ‘yes’ in the squid-vibrio symbiosis: nitric oxide (NO) during the initial stages of a beneficial association. Cell Microbiol 6 : 1139–1151. Article Google Scholar Dejonghe W, Boon N, Seghers D, Top EM, Verstraete W . (2001). Bioaugmentation of soils by increasing microbial richness: missing links. Environ Microbiol 3 : 649–657. Article CAS Google Scholar Denef V, Park J, Tsoi T, Rouillard J, Zhang H, Wibbenmeyer J et al . (2004). Biphenyl and benzoate metabolism in a genomic context: outlining genome-wide metabolic networks in Burkholderia xenovorans LB400. Appl Environ Microbiol 70 : 4961–4970. Article CAS Google Scholar Dewettinck T, Van Houtte E, Geenens D, Van Hege K, Verstraete W . (2001). HACCP (Hazard Analysis and Critical Control Points) to guarantee safe water reuse and drinking water production – a case study. Wat Sci Technol 43 : 31–38. Article CAS Google Scholar Gentry TJ, Wickham GS, Schadt CW . (2006). Microarray applications in microbial ecology research. Microb Ecol 52 : 159–175. Article CAS Google Scholar Hubbell SP, Borda-De-Agua L . (2004). The unified neutral theory of biodiversity and biogeography. Ecology 85 : 3175–3178. Article Google Scholar Ishii S, Kosaka T, Hori K, Hotta Y, Watanabe K . (2005). Coaggregation facilitates interspecies hydrogen transfer between Pelotomaculum thermopropionicum and Methanothermobacter thermautotrophicus . Appl Environ Microbiol 71 : 7838–7845. Article CAS Google Scholar Ishii S, Kosaka T, Hotta Y, Watanabe K . (2006). Simulating the contribution of coaggregation to interspecies hydrogen fluxes in syntrophic methanogenic consortia. Appl Environ Microbiol 72 : 5093–5096. Article CAS Google Scholar Jorgensen BB, Gallardo VA . (1999). Thioploca spp: filamentous sulfur bacteria with nitrate vacuoles. FEMS Microbiol Ecol 28 : 301–304. Article CAS Google Scholar Lajoie CA, Sayler GS, Kelly CJ . (2002). The activated sludge biomolecular database. Water Environ Res 74 : 480–487. Article CAS Google Scholar Lovley DR . (2006). Microbial fuel cells: novel microbial physiologies and engineering approaches. Current Opin Biotechnol 17 : 327–332. Article CAS Google Scholar Maes A, Van Raemdonck H, Smith K, Ossieur W, Lebbe L, Verstraete W . (2006). Transport and activity of Desulfitobacterium dichloroeliminans strain DCA1 during biomentation of 1,2-DCA-contaminated groundwater. Environ Sci Technol 40 : 5544–5552. Article CAS Google Scholar Mertens B, Boon N, Verstraete W . (2005). Stereospecific effect of hexachlorocyclohexane on activity and structure of soil methanotrophic communities. Environ Microbiol 7 : 660–669. Article CAS Google Scholar Mohanty SR, Bodelier PLE, Floris V, Conrad R . (2006). Differential effects of nitrogenous fertilizers on methane-consuming microbes in rice field and forest soils. Appl Environ Microbiol 72 : 1346–1354. Article CAS Google Scholar Molina L, Constantinescu F, Michel L, Reimmann C, Duffy B, Defago G . (2003). Degradation of pathogen quorum-sensing molecules by soil bacteria: a preventive and curative biological control mechanism. FEMS Microbiol Ecol 45 : 71–81. Article CAS Google Scholar O’Flaherty S, Ross RP, Meaney W, Fitzgerald GF, Elbreki MF, Coffey A . (2005). Potential of the polyvalent anti- Staphylococcus bacteriophage K for control of antibiotic-resistant Staphocci from hospitals. Appl Environ Microbiol 71 : 1836–1842. Article Google Scholar Rabaey K, Verstraete W . (2005). Microbial fuel cells: novel biotechnology for energy generation. Trends Biotechnol 23 : 291–298. Article CAS Google Scholar Schimel JP, Gulledge J . (1998). Microbial community structure and global trace gases. Global Change Biol 4 : 745–758. Article Google Scholar Signor RS, Ashbolt NJ . (2006). Pathogen monitoring offers questionable protection against drinking-water risks: a QMRA (Quantitative Microbial Risk Analysis) approach to assess management strategies. Water Sci Technol 54 : 261–268. Article CAS Google Scholar Taghavi S, Barac T, Greenberg B . (2005). Horizontal gene transfer to endogenous endophytic bacteria from poplar improves phytoremediation of toluene. Appl Environ Microbiol 71 : 8500–8505. Article CAS Google Scholar Tringe SG, Von Mering C, Kobayashi A, Salamov A, Chen K, Chang HW et al . (2005). Comparative metagenomics of microbial communities. Science 308 : 554–557. Article CAS Google Scholar Vaithiyanathan S, Sheikh Q, Ku R . (2005). Effect of transinoculation of goat rumen liquor on degradation and metabolism of mimosine in sheep fed with Leucaena leucocephala leaves. Asian Austral J Anim 18 : 332–339. Article Google Scholar Van de Gast CJ, Jefferson B, Reid E . (2006). Bacterial diversity is determined by volume in membrane bioreactors. Environ Microbiol 8 : 1048–1055. Article Google Scholar Vande Woestyne M, Gellens V, Anasi I, Verstraete W . (1995). Anaerobic digestion and inter-regional recycling of organic soil supplements. In: Marchaim U, Ney G (eds). Sustainable rural environment and energy network (SREN) – Biogas technology as an environmental solution to pollution. REUR Technical Series Number 33. FAO, Rome, pp 149–169. Verthe K, Possemiers S, Boon N, Vaneechoutte M, Verstraete W . (2004). Stability and activity of an Enterobacter aerogenes -specific bacteriophage under simulated gastro-intestinal conditions. Appl Microbiol Biotechnol 65 : 465–472. Article CAS Google Scholar Watanabe K, Teramoto M, Harayama S . (2002). Stable mentation of activated sludge with foreign catabolic genes harboured by an indigenous dominant bacterium. Environ Microbiol 4 : 577–583. Article CAS Google Scholar Zhao T, Doyle MP, Zhao P . (2004). Control of listefia monocytogenes in a Biofilm by competitive-exclusion microorganisms. Appl Environ Microbiol 70 : 3996–4003. Article CAS Google Scholar Download references