2014Plant BiotechnologyOpen access

Enhanced translation of the downstream ORF attributed to a long 5^|^#8242; untranslated region in the OsMac1 gene family members, OsMac2 and OsMac3

Hiromi Aoki, Hiroshi Teramura, Mikhail Schepetilnikov, Lyubov A. Ryabova, Hiroaki Kusano, Hiroaki Shimada

Open full text 14 citations

Abstract

The 5′-untranslated region (5′UTR) of mRNAs often affects the translational efficiency of the downstream open reading frames (ORFs), and some of its regulatory elements are involved in the initiation of translation. We found that the 5′UTR of the rice OsMac1 mRNA, which consisted of more than 500 nucleotides, yielded a significant enhancement of the translational efficiency of the downstream ORF. In the rice genome, OsMac1 represents a conserved gene family with two homologues, OsMac2 and OsMac3, which contain DUF300 (domain of unknown function 300) domains with predicted transmembrane regions. Similarly to the OsMac1 mRNA, the OsMac2 and OsMac3 mRNAs possess long 5′UTRs consisting of 312 and 318 nucleotides, respectively, that precede the main ORFs, which allow the elevation of the translational efficiency of the downstream ORF. The estimation of the translational efficiency of the GUS gene, which is located after the 5′UTRs, in suspension cultures of rice protoplasts showed that it was significantly greater than that of the control. These results suggest that 5′UTRs of OsMac2 and OsMac3 enhance the translation of the downstream ORF. Our results indicate that these 5′UTRs play a role of novel translational enhancer elements that enable the efficient translation of the downstream ORF.

Open-access reader

About this research paper

What this paper is about

The 5′-untranslated region (5′UTR) of mRNAs often affects the translational efficiency of the downstream open reading frames (ORFs), and some of its regulatory elements are involved in the initiation of translation. We found that the 5′UTR of the rice OsMac1 mRNA, which consisted of more than 500 nucleotides, yielded a significant enhancement of the translational efficiency of the downstream ORF. In the rice genome, OsMac1 represents a conserved gene family with two homologues, OsMac2 and OsMac3, which contain DUF300 (domain of unknown function 300) domains with predicted transmembrane regions. Similarly to the OsMac1 mRNA, the OsMac2 and OsMac3 mRNAs possess long 5′UTRs consisting of 312 and 318 nucleotides, respectively, that precede the main ORFs, which allow the elevation of the translational efficiency of the downstream ORF. The estimation of the translational efficiency of the GUS gene, which is located after the 5′UTRs, in suspension cultures of rice protoplasts showed that it was significantly greater than that of the control. These results suggest that 5′UTRs of OsMac2 and OsMac3 enhance the translation of the downstream ORF. Our results indicate that these 5′UTRs play a role of novel translational enhancer elements that enable the efficient translation of the downstream ORF.

Why it matters

OpenAlex reports 14 citations for this work. Citation counts describe recorded attention and do not establish research quality.

Key contribution

A contribution statement is not available in the OpenAlex record.

Method / approach

Method details are not available in the OpenAlex metadata.

Main findings

Findings are not separately available in the OpenAlex metadata.

Limitations

Limitations are not available in the OpenAlex metadata.

Applications

Application details are not available in the OpenAlex metadata.

Available abstract

The 5′-untranslated region (5′UTR) of mRNAs often affects the translational efficiency of the downstream open reading frames (ORFs), and some of its regulatory elements are involved in the initiation of translation. We found that the 5′UTR of the rice OsMac1 mRNA, which consisted of more than 500 nucleotides, yielded a significant enhancement of the translational efficiency of the downstream ORF. In the rice genome, OsMac1 represents a conserved gene family with two homologues, OsMac2 and OsMac3, which contain DUF300 (domain of unknown function 300) domains with predicted transmembrane regions. Similarly to the OsMac1 mRNA, the OsMac2 and OsMac3 mRNAs possess long 5′UTRs consisting of 312 and 318 nucleotides, respectively, that precede the main ORFs, which allow the elevation of the translational efficiency of the downstream ORF. The estimation of the translational efficiency of the GUS gene, which is located after the 5′UTRs, in suspension cultures of rice protoplasts showed that it was significantly greater than that of the control. These results suggest that 5′UTRs of OsMac2 and OsMac3 enhance the translation of the downstream ORF. Our results indicate that these 5′UTRs play a role of novel translational enhancer elements that enable the efficient translation of the downstream ORF.

Key concepts: ORFS, Untranslated region, Biology, Open reading frame, Translation (biology), Translational regulation, Translational efficiency, Five prime untranslated region

Related papers

Back to paper searchBrowse research topicsOriginal source
Enhanced translation of the downstream ORF attributed to a long 5^|^#8242; untranslated region in the OsMac1 gene family members, OsMac2 and OsMac3 — Research Paper | ScholarLens