Hydrogen bonds to carboxylate groups. The question of three-centre interactions
Carl Henrik Görbitz, Margaret C. Etter
Abstract
Carl Henrik Görbitz, Margaret C. Etter
Abstract
Hydrogen bond geometries as well as their stereochemical preferences have been compared for 255 small molecule carboxylate structures retrieved from the Cambridge Structural Database. A total of 974 independent hydrogen bonds were analysed. Hydrogen atoms cluster in the carboxylate lone-pair directions with no tendency to adopt a central, symmetric position between the two oxygens. The long, secondary H ⋯ O contacts of asymmetric syn hydrogen bonds do not affect either the overall geometries of the interactions or the total syn/anti distribution of accepted H-atoms, presumably due to very unfavourable CO ⋯ H angles. On this basis it is suggested that syn hydrogen bonds to carboxylates should be regarded most frequently as two-centre rather than three-centre (bifurcated) interactions. The statistical data also show that criteria traditionally used to infer three-centre hydrogen bonds are inadequate for carboxylate acceptors.
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Hydrogen bond geometries as well as their stereochemical preferences have been compared for 255 small molecule carboxylate structures retrieved from the Cambridge Structural Database. A total of 974 independent hydrogen bonds were analysed. Hydrogen atoms cluster in the carboxylate lone-pair directions with no tendency to adopt a central, symmetric position between the two oxygens. The long, secondary H ⋯ O contacts of asymmetric syn hydrogen bonds do not affect either the overall geometries of the interactions or the total syn/anti distribution of accepted H-atoms, presumably due to very unfavourable CO ⋯ H angles. On this basis it is suggested that syn hydrogen bonds to carboxylates should be regarded most frequently as two-centre rather than three-centre (bifurcated) interactions. The statistical data also show that criteria traditionally used to infer three-centre hydrogen bonds are inadequate for carboxylate acceptors.
Key concepts: Carboxylate, Hydrogen bond, Chemistry, Lone pair, Molecule, Cluster (spacecraft), Crystallography, Hydrogen