Non-elementary amenable subgroups of automata groups

We consider groups of automorphisms of rooted locally finite trees, and give conditions on its subgroups that imply that they are not elementary amenable. We give a unified proof for all known examples of non-elementary amenable groups that act on the trees: groups of intermediate growths and Basilica group. Moreover, we show that all finitely generated branch groups are not elementary amenable, which was conjectured by Grigorchuk.